Sequence databases

Comammox amoA - ammonia monooxygenase (25.09.2017)

ARB Database (.arb)

If you use this database please cite: Pjevac P, Schauberger C, Poghosyan L, Herbold CW, van Kessel MAHJ, Daebeler A, Steinberger M, Jetten MSM, Lücker S, Wagner M, Daims H. 2017. Front. Microbiol. 8:1508


dsrAB - dissimilatory sulfite reductase (01.07.2014)

If you use this database please cite: Müller AL, Kjeldsen KU, Rattei T, Pester M, Loy A. 2015. Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases. ISME J91152-1165

If you use these files please cite: Pelikan C, Herbold CW, Hausmann B, Müller AL, Pester M, Loy A. 2016. Diversity analysis of sulfite- and sulfate-reducing microorganisms by multiplex dsrA and dsrB amplicon sequencing using new primers and mock community-optimized bioinformatics. Environ. Microbiol. doi: 10.1111/1462-2920.13139.

dsrAB - dissimilatory sulfite reductase (01.07.2008)

If you use this database please cite: Loy A, Duller S, Baranyi C, Mußmann M, Ott J, Sharon I, Béjà O, Le Paslier D, Dahl C, Wagner M. 2008. Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes. Environ. Microbiol. 11: 289-299.

dsrAB - dissimilatory sulfite reductase (10.09.2004)

If you use this database please cite: Zverlov V, Klein M, Lücker S, Friedrich MW, Kellermann J, Stahl DA, Loy A, Wagner M. 2005. Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited. J. Bacteriol. 187: 2203-2208.


nxrB - nitrite oxidoreductase of Nitrospira (01.07.2010)

If you use this database please cite: Pester M, Maixner F, Berry D, Rattei T, Koch H, Lücker S, Nowka B, Richter A, Spieck E, Lebedeva E, Loy A, Wagner M, Daims H. 2014. NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira. Environ. Microbiol. 163055-3071


16S rRNA - sponge associated microorganisms (12.06.2007)

If you use this database please cite: Taylor M, Radax R, Steger D, Wagner M. 2007. Sponge-associated microorganisms: evolution, ecology and biotechnological potential. Microbiol. Mol. Biol. Rev. 71: 295-347.


NTT - ATP/ADP translocases and homologues (05.11.2003)

If you use this database please cite: Schmitz-Esser S, Linka N, Collingro A, Beier C L, Neuhaus HE, Wagner M, Horn M. 2004. ATP/ADP translocases: A common feature of obligate intracellular amoebal symbionts related to chlamydiae and rickettsiae. J. Bacteriol. 186: 683-691.


Other supplementary online material

Lücker S, Steger D, Kjeldsen KU, MacGregor BJ, Wagner M, Loy A. 2007. Improved 16S rRNA-targeted probe set for analysis of sulfate-reducing bacteria by fluorescence in situ hybridization. J. Microbiol. Methods. 69: 523-528.
Loy A, Schulz C, Lücker S, Schöpfer-Wendels A, Stoecker K, Baranyi C, Lehner A, Wagner M. 2005. 16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order Rhodocyclales. Appl. Environ. Microbiol. 71: 1373-1386.
Zverlov V, Klein M, Lücker S, Friedrich MW, Kellermann J, Stahl DA, Loy A,  Wagner M. 2005. Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited. J. Bacteriol. 187: 2203-2208.
Horn M, Collingro A, Schmitz-Esser S, Beier CL, Purkhold U, Fartmann B, Brandt P, Nyakatura GJ, Droege M, Frishman D, Rattei T, Mewes HW, Wagner M. 2004. Illuminating the evolutionary history of chlamydiae. Science 304: 728-730.
Adamczyk J, Hesselsoe M, Iversen N, Horn M, Lehner A, Nielsen PH, Schloter M, Roslev P, Wagner M. 2003. The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function. Appl. Environ. Microbiol. 69: 6875-87.
Purkhold U, Wagner M, Timmermann G, Pommerening-Röser A, Koops HP. 2003. 16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia oxidizing isolates: extension of the data set and proposal of a new lineage within the Nitrosomonads. Int. J. Syst. Evol. Microbiol. 53: 1485-94.
Loy A, Lehner A, Lee N, Adamczyk J, Meier H, Ernst J, Schleifer KH, Wagner M. 2002. Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl. Environ. Microbiol. 68: 5064-81.
Loy A, Daims H, Wagner M. 2002. Activated Sludge: Molecular techniques for determining community composition. pp. 26-43 in The Encyclopedia of Environmental Microbiology, (G. Bitton, ed.). Wiley, New York.