Publications in peer reviewed journals- Loy A, Arnold R, Tischler P, Rattei T, Wagner M, Horn M. 2008. probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity. Environ. Microbiol. , in press.
- Ruehland C, Blazejak A, Lott C, Loy A, Erseus C, Dubilier N. 2008. Multiple bacterial symbionts in two species of co-occurring gutless oligochaete worms from Mediterranean sea grass sediments. Environ Microbiol. , in press.
- Miletto M, Loy A, Antheunisse AM, Loeb R, Bodelier PLE, Laanbroek HJ. 2008. Biogeography of sulfate-reducing prokaryotes in river floodplains. FEMS Microbiol. Ecol. 64: 395-406.
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- Wagner M, Smidt H, Loy A, Zhou J. 2007. Unravelling microbial communities with DNA-microarrays: challenges and future directions. Microb. Ecol. 53: 498-506.
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- Lücker S, Steger D, Kjeldsen KU, MacGregor BJ, Wagner M, Loy A. 2007. Improved 16S rRNA-targeted oligonucleotide probe set for analysis of sulfate-reducing bacteria by fluorescence in situ hybridization. J. Microbiol. Methods. 69: 523-528.
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Supplementary online material
- Kjeldsen KU, Loy A, Thomsen TR, Jakobsen TF, Wagner M, and Ingvorsen K. 2007. Diversity of sulfate-reducing bacteria from an extreme hypersaline sediment in Great Salt Lake (Utah, USA). FEMS Microbiol. Ecol. 60: 287-298.
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- Loy A, Maixner F, Wagner M, Horn M. 2007. probeBase - an online resource for rRNA-targeted oligonucleotide probes: new features 2007. Nucleic Acids Res. 35: D800-D804.
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- Leloup J, Loy A, Knab NJ, Borowski C, Wagner M, Jørgensen BB. 2007. Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea. Environ. Microbiol. 9: 131-142.
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- Imachi H, Sekiguchi Y, Kamagata Y, Loy A, Qiu YL, Hugenholtz P, Kimura N, Wagner M, Ohashi A, Harada H. 2006. Non-sulfate-reducing, syntrophic bacteria affiliated with the Desulfotomaculum cluster I are widely distributed in methanogenic environments. Appl. Environ. Microbiol. 72: 2080-2091.
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- Wagner M, Nielsen PH, Loy A, Nielsen JL, Daims H. 2006. Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays. Curr. Opin. Biotechnol. 17: 1-9.
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- Loy A, Bodrossy L. 2006. Highly parallel microbial diagnostics using oligonucleotide microarrays. Clinica Chimica Acta 363: 106-119.
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- Sabehi G, Loy A, Jung KH, Partha R, Spudich JL, Isaacson T, Hirschberg J, Wagner M, Beja O. 2005. New insights into metabolic properties of marine bacteria encoding proteorhodopsins. PLoS Biol. 3: e273.
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- Lehner A, Loy A, Behr T, Gaenge H, Ludwig W, Wagner M, Schleifer KH. 2005. Oligonucleotide microarray for identification of Enterococcus species. FEMS Microbiol. Lett. 246: 133-142.
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- Wagner M, Loy A, Klein M, Lee N,Ramsing NB, Stahl DA, Friedrich MW. 2005. Functional marker genes for identification of sulphate-reducing prokaryotes. Methods Enzymol. 397: 469-489.
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- Loy A, Beisker W, Meier H. 2005. Diversity of bacteria growing in a natural mineral water after bottling. Appl. Environ. Microbiol. 71: 3624-3632.
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- Zverlov V, Klein M, Lücker S, Friedrich MW, Kellermann J, Stahl DA, Loy A, Wagner M. 2005. Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited. J. Bacteriol. 187: 2203-2208.
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- Loy A, Schulz C, Lücker S, Schöpfer-Wendels A, Stoecker K, Baranyi C, Lehner A, Wagner M. 2005. 16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order Rhodocyclales. Appl. Environ. Microbiol. 71: 1373-1386.
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- Loy A, Küsel K, Lehner A, Drake HL, Wagner M. 2004. Microarray and functional gene analyses of sulfate-reducing prokaryotes in low sulfate, acidic fens reveal co-occurrence of recognized
genera and novel lineages. Appl. Environ. Microbiol. 70: 6998-7009.
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- Loy A, Horn M, Wagner M.. 2003. probeBase - an online resource for rRNA-targeted oligonucleotide probes. Nucleic Acids Res. 31: 514-516.
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- Loy A, Lehner A, Lee N, Adamczyk J, Meier H, Ernst J, Schleifer KH, Wagner M. 2002. Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl. Environ. Microbiol. 68: 5064-5081.
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- Wagner M, Loy A, Nogueira R, Purkhold U, Lee N, Daims H. 2002. Microbial community composition and function in wastewater treatment plants. Antonie van Leeuwenhoek 81: 665-680 .
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- Wagner M, Loy A. 2002. Bacterial community composition and function in sewage treatment systems. Curr. Opin. Biotechnol. 13: 218-227.
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- Juretschko S, Loy A, Lehner A, Wagner M. 2002. The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach. Syst. Appl. Microbiol. 25: 84-99.
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Book chapters and other publications- Loy A, Duller S, and Wagner M.. 2008. Evolution and ecology of microbes dissimilating sulfur compounds: Insights from siroheme sulfite reductases. In Microbial Sulfur Metabolism, pp. 46-59. (Friedrich C, Dahl C, ed.). Springer, New York.
- Stahl DA, Loy A, Wagner M. 2007. Molecular strategies for studies of natural populations of sulphate-reducing microorganisms. In Sulfate-reducing bacteria: Environmental and engineered systems, pp. 39-117. (Barton LL, Hamilton WA, ed.). Cambridge University Press, Cambridge, UK.
- Taylor MW, Loy A, and Wagner M. 2007. Microarrays for studying the composition and function of microbial communities. In The microbiology of activated sludge, in press. (Seviour RJ, Blackall LL, ed.). IWA Publishing, London, UK.
- Loy A, Taylor MW, Bodrossy L, Wagner M. 2006. Applications of nucleic acid microarrays in soil microbial ecology. In Molecular approaches to soil, rhizosphere and plant microorganism analysis, pp. 18-41. (Cooper JE, Rao JR, ed.). CABI Publishing, Wallingford, Oxfordshire, UK.
PDF - Bodrossy L, Loy A. 2005. Oligonucleotide microarrays in microbial diagnostics. In Encyclopedia of medical genomics and proteomics, pp. 1-8. (Fuchs J, Podda M, ed.). Marcel Dekker Inc., New York, USA.
PDF - Loy A, Wagner M. 2004. Analyse komplexer mikrobieller Lebensgemeinschaften mit phylogenetischen Mikroarrays. BioSpektrum 6: 745-747.
PDF - Loy A, Daims H, Wagner M. 2002. Activated Sludge: Molecular techniques for determining community composition. In The Encyclopedia of Environmental Microbiology, pp. 26-43. (Bitton G, ed.). Wiley, New York .
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